{
  "_id": "6abd1cfe99f7aa8c6aa4f54f",
  "Package": "clis",
  "Type": "Package",
  "Title": "Conformal Local Influence Screening for Bounded-Response\nRegression",
  "Version": "0.3.6",
  "Authors@R": "c(\nperson(\"Raydonal\", \"Ospina\", email = \"raydonal@de.ufpe.br\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-9884-9090\")))",
  "Description": "Provides fast, statistically calibrated influence\ndiagnostics for zero-or-one inflated beta (BIc) regression\nmodels with variable dispersion. The core idea is to use the\nconformal normal curvature of Poon and Poon (1999)\n<doi:10.1111/1467-9868.00162> as a non-conformity score within\na split-conformal testing procedure, yielding per-observation\nconformal p-values whose Benjamini-Hochberg adjustment controls\nthe false discovery rate at a user-specified level (Bates and\nothers, 2023) <doi:10.1214/22-AOS2244>. Unlike classical local\ninfluence diagnostics, which rely on visual inspection of index\nplots and do not scale beyond a few hundred observations,\n'clis' provides a finite-sample error guarantee and runs in\nlinear time per observation after a single model fit. Methods\nfor four perturbation schemes, block decomposition of influence\ninto the inflation-probability and conditional-mean/precision\ncomponents, penalised additive (semiparametric) submodels, and\na full suite of diagnostic plots are included.",
  "License": "GPL-3",
  "URL": "https://github.com/Raydonal/clis, https://raydonal.github.io/clis/",
  "BugReports": "https://github.com/Raydonal/clis/issues",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "Roxygen": "list(markdown = TRUE)",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-30 14:24:04 UTC",
    "User": "root"
  },
  "Author": "Raydonal Ospina [aut, cre]\n(<https://orcid.org/0000-0002-9884-9090>)",
  "Maintainer": "Raydonal Ospina <raydonal@de.ufpe.br>",
  "Config/roxygen2/version": "8.1.0",
  "Repository": "https://raydonal.r-universe.dev",
  "Date/Publication": "2026-09-19 00:25:32 UTC",
  "RemoteUrl": "https://github.com/raydonal/clis",
  "RemoteRef": "HEAD",
  "RemoteSha": "1b80ed1b0a9ddaf17e4a7f9cf5ad9ec858a4a42a",
  "_user": "raydonal",
  "_type": "src",
  "_file": "clis_0.3.6.tar.gz",
  "_fileid": "https://r2.ropensci.org/f549b0930e3221f5ea7b0da375155a4454d49d5b335e6c2d9b1183b40945ea16",
  "_filesize": 462535,
  "_sha256": "f549b0930e3221f5ea7b0da375155a4454d49d5b335e6c2d9b1183b40945ea16",
  "_expires": "2027-01-08T14:30:20.000Z",
  "_created": "2026-09-30T14:24:04.000Z",
  "_published": "2026-09-30T14:30:22.083Z",
  "_jobs": [
    {
      "job": 109932798131,
      "time": 141,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11103669247"
    },
    {
      "job": 109932798091,
      "time": 130,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11104315197"
    },
    {
      "job": 109932797752,
      "time": 109,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11104580602"
    },
    {
      "job": 109932797762,
      "time": 108,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11104435551"
    },
    {
      "job": 109931327357,
      "time": 196,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11102614847"
    },
    {
      "job": 109932797864,
      "time": 75,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11103543884"
    },
    {
      "job": 109932797960,
      "time": 107,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11103763707"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/raydonal/actions/runs/36728396402",
  "_status": "success",
  "_upstream": "https://github.com/raydonal/clis",
  "_commit": {
    "id": "1b80ed1b0a9ddaf17e4a7f9cf5ad9ec858a4a42a",
    "author": "Raydonal <raydonal@de.ufpe.br>",
    "committer": "Raydonal <raydonal@de.ufpe.br>",
    "message": "Fix CRAN pretest structural NOTEs per maintainer feedback\n\nMove data-raw/ to inst/data-raw/ so it installs at the top level of the\ninstalled package instead of shipping as a non-standard top-level\ndirectory in the source tarball. Exclude cran-comments.md from the built\npackage via .Rbuildignore -- CRAN does not want this file in the tarball;\nsubmission comments belong in the CRAN web form instead. Also fix a stale\nvignette reference to a since-split data-raw/application.R script.\n",
    "time": 1789777532
  },
  "_maintainer": {
    "name": "Raydonal Ospina",
    "email": "raydonal@de.ufpe.br",
    "login": "raydonal",
    "description": "",
    "uuid": 16047363,
    "orcid": "0000-0002-9884-9090"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "gamlss",
      "version": ">= 5.4.0",
      "role": "Imports"
    },
    {
      "package": "gamlss.dist",
      "version": ">= 6.0.0",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "betareg",
      "role": "Suggests"
    },
    {
      "package": "gamlss.data",
      "role": "Suggests"
    }
  ],
  "_owner": "raydonal",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-38",
      "n": 6
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "raydonal",
      "count": 6,
      "uuid": 16047363
    }
  ],
  "_userbio": {
    "uuid": 16047363,
    "type": "user",
    "name": "Raydonal Ospina",
    "followers": 39
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/clis"
  },
  "_devurl": "https://github.com/raydonal/clis",
  "_pkgdown": "https://raydonal.github.io/clis/",
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/clis.html",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/raydonal/clis",
  "_realowner": "raydonal",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.3.6",
      "date": "2026-09-29"
    }
  ],
  "_exports": [
    "bic_info",
    "bic_link",
    "bic_penalty",
    "bic_quantile_residuals",
    "clis_screen",
    "cnc_block_decomp",
    "cnc_matrix",
    "cnc_scores",
    "cnc_scores_linear",
    "conformal_pvalues",
    "delta_caseweights",
    "delta_disccovar",
    "delta_meancovar",
    "delta_preccovar",
    "envelope_bic",
    "load_vaccination",
    "plot_clis",
    "plot_cnc_panels",
    "plot_influence",
    "plot_residuals"
  ],
  "_help": [
    {
      "page": "bic_info",
      "title": "Observed or Fisher information matrix for a BIc model",
      "topics": [
        "bic_info"
      ]
    },
    {
      "page": "bic_link",
      "title": "Link function and its derivatives for BIc submodels",
      "topics": [
        "bic_link"
      ]
    },
    {
      "page": "bic_penalty",
      "title": "Extract the penalty matrix from a fitted additive BIc model",
      "topics": [
        "bic_penalty"
      ]
    },
    {
      "page": "bic_quantile_residuals",
      "title": "Randomized quantile residuals for BEZI/BEOI models",
      "topics": [
        "bic_quantile_residuals"
      ]
    },
    {
      "page": "clis_screen",
      "title": "Conformal Local Influence Screening",
      "topics": [
        "clis_screen"
      ]
    },
    {
      "page": "cnc_block_decomp",
      "title": "Block decomposition of conformal normal curvature",
      "topics": [
        "cnc_block_decomp"
      ]
    },
    {
      "page": "cnc_matrix",
      "title": "Conformal normal curvature matrix",
      "topics": [
        "cnc_matrix"
      ]
    },
    {
      "page": "cnc_scores",
      "title": "Per-observation conformal normal curvature scores",
      "topics": [
        "cnc_scores"
      ]
    },
    {
      "page": "cnc_scores_linear",
      "title": "Linear-time per-observation CNC scores",
      "topics": [
        "cnc_scores_linear"
      ]
    },
    {
      "page": "conformal_pvalues",
      "title": "Conformal p-values from non-conformity scores",
      "topics": [
        "conformal_pvalues"
      ]
    },
    {
      "page": "delta_caseweights",
      "title": "Perturbation matrix for the case-weights scheme",
      "topics": [
        "delta_caseweights"
      ]
    },
    {
      "page": "delta_disccovar",
      "title": "Perturbation matrix for the discrete-covariate scheme",
      "topics": [
        "delta_disccovar"
      ]
    },
    {
      "page": "delta_meancovar",
      "title": "Perturbation matrix for the mean-covariate scheme",
      "topics": [
        "delta_meancovar"
      ]
    },
    {
      "page": "delta_preccovar",
      "title": "Perturbation matrix for the precision-covariate scheme",
      "topics": [
        "delta_preccovar"
      ]
    },
    {
      "page": "envelope_bic",
      "title": "Simulated envelope for quantile residuals",
      "topics": [
        "envelope_bic"
      ]
    },
    {
      "page": "load_vaccination",
      "title": "National DTP3 vaccination coverage (2022)",
      "topics": [
        "load_vaccination"
      ]
    },
    {
      "page": "plot_clis",
      "title": "Plot a CLIS screening result",
      "topics": [
        "plot_clis"
      ]
    },
    {
      "page": "plot_cnc_panels",
      "title": "Plot the classical CNC diagnostic panels",
      "topics": [
        "plot_cnc_panels"
      ]
    },
    {
      "page": "plot_influence",
      "title": "Classical local-influence index plot",
      "topics": [
        "plot_influence"
      ]
    },
    {
      "page": "plot_residuals",
      "title": "Diagnostic residual plots for a BIc model",
      "topics": [
        "plot_residuals"
      ]
    }
  ],
  "_readme": "https://github.com/raydonal/clis/raw/HEAD/README.md",
  "_rundeps": [
    "gamlss",
    "gamlss.data",
    "gamlss.dist",
    "lattice",
    "MASS",
    "Matrix",
    "nlme",
    "survival"
  ],
  "_vignettes": [
    {
      "source": "clis-intro.Rmd",
      "filename": "clis-intro.html",
      "title": "Conformal Local Influence Screening with clis",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Motivation",
        "A worked example",
        "Screening with FDR control",
        "Block decomposition",
        "Classical CNC panels",
        "Perturbation schemes",
        "A practical workflow",
        "Why the guarantee holds",
        "Semiparametric fits",
        "Smoothing-parameter selection"
      ],
      "created": "2026-09-17 19:08:39",
      "modified": "2026-09-19 00:25:32",
      "commits": 2
    }
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "clis",
  "_universes": [
    "raydonal"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.6",
      "date": "2026-09-30T14:26:24.000Z",
      "distro": "resolute",
      "commit": "1b80ed1b0a9ddaf17e4a7f9cf5ad9ec858a4a42a",
      "fileid": "https://r2.ropensci.org/a857b5f57cd739d033a2f24e56e76446ae22bf92336977851870d48a78a17d24",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/raydonal/actions/runs/36728396402"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.3.6",
      "date": "2026-09-30T14:26:16.000Z",
      "distro": "resolute",
      "commit": "1b80ed1b0a9ddaf17e4a7f9cf5ad9ec858a4a42a",
      "fileid": "https://r2.ropensci.org/75e85871b4cf7860c7058e4bae17290882d60cc6367f9695dbc44103b303db44",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/raydonal/actions/runs/36728396402"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.6",
      "date": "2026-09-30T14:29:39.000Z",
      "commit": "1b80ed1b0a9ddaf17e4a7f9cf5ad9ec858a4a42a",
      "fileid": "https://r2.ropensci.org/eb614e0be80b99a6bc2dc1f8ae0c3d879744e82f69a4ed80a36cda1d101608d9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/raydonal/actions/runs/36728396402"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.3.6",
      "date": "2026-09-30T14:29:15.000Z",
      "commit": "1b80ed1b0a9ddaf17e4a7f9cf5ad9ec858a4a42a",
      "fileid": "https://r2.ropensci.org/5a8daf7d0809efdb457b8f34a732f47052c26c10da36bf1aee4aa952a0d946a4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/raydonal/actions/runs/36728396402"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.6",
      "date": "2026-09-30T14:26:12.000Z",
      "commit": "1b80ed1b0a9ddaf17e4a7f9cf5ad9ec858a4a42a",
      "fileid": "https://r2.ropensci.org/5f6c526b5f0245ae9fba220b510ef6769b23d032084fe73337c3bbf1496e2d8f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/raydonal/actions/runs/36728396402"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.6",
      "date": "2026-09-30T14:25:13.000Z",
      "commit": "1b80ed1b0a9ddaf17e4a7f9cf5ad9ec858a4a42a",
      "fileid": "https://r2.ropensci.org/1193833abd55d23a8a686c8e8f6d38f693b3d846321d39d1643e89577656ee42",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/raydonal/actions/runs/36728396402"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.6",
      "date": "2026-09-30T14:25:17.000Z",
      "commit": "1b80ed1b0a9ddaf17e4a7f9cf5ad9ec858a4a42a",
      "fileid": "https://r2.ropensci.org/e819840ed3bced231155974cdc7e65d0f17adb8ecd183f5d870b73381af89411",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/raydonal/actions/runs/36728396402"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.3.6",
      "date": "2026-09-30T14:25:48.000Z",
      "commit": "1b80ed1b0a9ddaf17e4a7f9cf5ad9ec858a4a42a",
      "fileid": "https://r2.ropensci.org/d5dfe97dcf87f85d4801ff8c71a701c6b23621166af909ec2fbb713580aafae1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/raydonal/actions/runs/36728396402"
    }
  ]
}